Datasets
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Loneliness, Anxiety Symptoms, Depressive Symptoms, and Suicidal Ideation in the All of Us Dataset
Katherine Musacchio Schafer; Jacob Franklin; Peter J. Emb铆; Colin G. Walsh (2026).聽Loneliness, anxiety symptoms, depressive symptoms, and suicidal ideation in the All of Us dataset.聽JAMA Network Open, 9(3), e260596.聽https://doi.org/10.1001/jamanetworkopen.2026.0596 This study examined how feelings of loneliness may help explain the link between anxiety, depression,… Read MoreMar. 26, 2026
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Microenvironment-aware spatial modeling for accurate inference of cell identity
Liu, Qi; Wang, Yu; Hsu, Chihyuan; Wanjalla, Celestine N.; Lau, Ken S.; & Shyr, Yu. (2026).聽Microenvironment-aware spatial modeling for accurate inference of cell identity.聽Nucleic Acids Research,聽54(1).聽https://doi.org/10.1093/nar/gkaf1477 Spatial omics technologies make it possible to measure many molecular features in cells while also preserving information about… Read MoreJan. 28, 2026
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Biomedical data repositories require governance for artificial intelligence/machine learning applications at every step
Clayton, E. W., Rose, S., Nebecker, C., Novak, L., Bensoussan, Y. E., Chen, Y., Collins, B. X., Cordes, A., Evans, B. J., Ferryman, K. S., Hurst, S., Jiang, X., Lee, A. Y., McWeeney, S., Parker, J., B茅lisle-Pipon, J.-C., Rosenthal, E. S., Yin, Z., Yracheta, J. M., & Malin,… Read MoreDec. 19, 2025
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Fine-grained multiclass nuclei segmentation with molecular empowered all-in-SAM model
Li, Xueyuan., Cui, Can., Deng, Ruining., Tang, Yucheng., Liu, Quan., Yao, Tianyuan., Bao, Shunxing., Chowdhury, Naweed Iffat., Yang, Haichun., & Huo, Yuankai. (2025).聽Fine-grained multiclass nuclei segmentation with molecular empowered all-in-SAM model.聽Journal of Medical Imaging,聽12(5), 57501.聽https://doi.org/10.1117/1.JMI.12.5.057501 Recent advances in computational pathology鈥攖he use of computers to… Read MoreNov. 23, 2025
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Multimodal state-dependent connectivity analysis of arousal and autonomic centers in the brainstem and basal forebrain
Pourmotabbed, Haatef, Martin, Caroline G., Goodale, Sarah E., Doss, Derek J., Wang, Shiyu, Bayrak, Roza G., Kang, Hakmook, Morgan, Victoria L., Englot, Dario J., & Chang, Catie E. (2025). 鈥淢ultimodal state-dependent connectivity analysis of arousal and autonomic centers in the brainstem and basal forebrain.鈥� Imaging Neuroscience, 3,… Read MoreAug. 25, 2025
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Scalable quality control on processing of large diffusion-weighted and structural magnetic resonance imaging datasets
Kim, Michael E., Gao, Chenyu, Newlin, Nancy R., Rudravaram, Gaurav, Krishnan, Aravind R., Ramadass, Karthik, Kanakaraj, Praitayini, Schilling, Kurt G., Dewey, Blake E., & Bennett, David Alan. (2025). 鈥淪calable quality control on processing of large diffusion-weighted and structural magnetic resonance imaging datasets.鈥� PLOS ONE, 20(8), e0327388. Read MoreAug. 25, 2025
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Edge Classification on Graphs: New Directions in Topological Imbalance
Cheng, Xueqi; Wang, Yu; Liu, Yunchao; Zhao, Yuying; Aggarwal, Charu C.; Derr, Tyler. “Edge Classification on Graphs: New Directions in Topological Imbalance.” WSDM 2025 – Proceedings of the 18th ACM International Conference on Web Search and Data Mining (2025): 392-400. https://doi.org/10.1145/3701551.3703518. Read MoreApr. 23, 2025